Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yhdp family protein | CAY62_RS12570 | Not Available | Negative | 2672564 - 2676448 | 143312.0 |
| ribonuclease g | CAY62_RS12575 | Not Available | Negative | 2676462 - 2677931 | 55269.4 |
| maf family protein | CAY62_RS12580 | Not Available | Negative | 2677940 - 2678521 | 21499.6 |
| rod shape-determining protein mred | CAY62_RS12585 | Not Available | Negative | 2678592 - 2679080 | 18766.8 |
| rod shape-determining protein mrec | CAY62_RS12590 | Not Available | Negative | 2679070 - 2680032 | 35446.9 |
| rod shape-determining protein mreb | CAY62_RS12595 | Not Available | Negative | 2680074 - 2681117 | 36958.5 |
| duf6701 domain-containing protein | CAY62_RS12600 | Not Available | Negative | 2681477 - 2685625 | 153215.0 |
| mshp protein | CAY62_RS12605 | Not Available | Negative | 2685625 - 2686050 | 15758.1 |
| type ii secretion system protein j | CAY62_RS12610 | Not Available | Negative | 2686040 - 2686765 | 26534.9 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | CAY62_RS12615 | Not Available | Negative | 2686765 - 2687421 | 23906.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
