Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rnase adapter rapz | CAY62_RS12520 | Not Available | Positive | 2663392 - 2664243 | 32291.8 |
| hpr family phosphocarrier protein | CAY62_RS12525 | Not Available | Positive | 2664240 - 2664512 | 9671.58 |
| magnesium transporter | CAY62_RS12530 | Not Available | Positive | 2664773 - 2666131 | 49198.4 |
| amino acid abc transporter atp-binding protein | CAY62_RS12535 | Not Available | Negative | 2666227 - 2666706 | 17203.7 |
| is21-like element helper atpase istb | CAY62_RS12540 | Not Available | Negative | 2666774 - 2667532 | 28681.8 |
| is21 family transposase | CAY62_RS12545 | Not Available | Negative | 2667519 - 2668562 | 40000.6 |
| amino acid abc transporter atp-binding protein | CAY62_RS12550 | Not Available | Negative | 2668653 - 2669519 | 31172.5 |
| ribosome biogenesis factor yjga | CAY62_RS12555 | Not Available | Positive | 2669631 - 2670155 | 20684.2 |
| metalloprotease tldd | CAY62_RS12560 | Not Available | Negative | 2670254 - 2671702 | 51169.0 |
| carbon-nitrogen hydrolase family protein | CAY62_RS12565 | Not Available | Negative | 2671715 - 2672536 | 30563.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
