Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidylprolyl isomerase | CAY62_RS15820 | Not Available | Positive | 216019 - 216345 | 11849.6 |
| duf1837 domain-containing protein | CAY62_RS15825 | Not Available | Positive | 216846 - 217547 | 26468.4 |
| dead/deah box helicase | CAY62_RS15830 | Not Available | Positive | 217547 - 219643 | 80165.8 |
| bacteriophage abortive infection abih family protein | CAY62_RS15835 | Not Available | Negative | 219677 - 220636 | 37034.8 |
| pin domain-containing protein | CAY62_RS15840 | Not Available | Negative | 220638 - 221738 | 42437.2 |
| hypothetical protein | CAY62_RS15845 | Not Available | Positive | 222236 - 222442 | 7837.45 |
| is3 family transposase | CAY62_RS15850 | Not Available | Negative | 222457 - 223308 | 32828.9 |
| transposase | CAY62_RS15855 | Not Available | Negative | 223305 - 223601 | 11187.5 |
| gnat family n-acetyltransferase | CAY62_RS15860 | Not Available | Positive | 223697 - 223924 | 8702.75 |
| hypothetical protein | CAY62_RS21610 | Not Available | Negative | 223997 - 224170 | 6531.77 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
