Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS15770 | Not Available | Negative | 200100 - 200372 | 10078.7 |
| duf4336 domain-containing protein | CAY62_RS15775 | Not Available | Negative | 200706 - 201416 | 27300.2 |
| hth-type transcriptional regulator malt | CAY62_RS15780 | Not Available | Negative | 201435 - 204143 | 103643.0 |
| glycogen/starch/alpha-glucan phosphorylase | CAY62_RS15785 | Not Available | Positive | 204566 - 207028 | 92863.6 |
| 4-alpha-glucanotransferase | CAY62_RS15790 | Not Available | Positive | 207144 - 209324 | 81860.1 |
| 1,4-alpha-glucan branching protein glgb | CAY62_RS15795 | Not Available | Positive | 209379 - 211526 | 82070.9 |
| abc-atpase domain-containing protein | CAY62_RS15800 | Not Available | Negative | 211639 - 213285 | 61920.3 |
| atp-binding protein | CAY62_RS15805 | Not Available | Negative | 213464 - 214792 | 49902.9 |
| response regulator transcription factor | CAY62_RS15810 | Not Available | Negative | 214782 - 215441 | 24516.6 |
| pepsy domain-containing protein | CAY62_RS15815 | Not Available | Negative | 215438 - 215791 | 13472.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
