Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2271 domain-containing protein | CAY62_RS15660 | Not Available | Positive | 180393 - 180911 | 19841.5 |
| duf4198 domain-containing protein | CAY62_RS15665 | Not Available | Positive | 180935 - 181771 | 31139.1 |
| hypothetical protein | CAY62_RS15670 | Not Available | Positive | 181781 - 182101 | 11799.0 |
| duf6162 family protein | CAY62_RS15675 | Not Available | Positive | 182098 - 182697 | 22499.3 |
| metal abc transporter solute-binding protein, zn/mn family | CAY62_RS15680 | Not Available | Positive | 182710 - 183633 | 34006.1 |
| metal abc transporter atp-binding protein | CAY62_RS15685 | Not Available | Positive | 183633 - 184424 | 29141.1 |
| metal abc transporter permease | CAY62_RS15690 | Not Available | Positive | 184424 - 185299 | 31215.9 |
| metal abc transporter solute-binding protein, zn/mn family | CAY62_RS15695 | Not Available | Positive | 185303 - 186211 | 33821.7 |
| exo-alpha-sialidase | CAY62_RS15700 | Not Available | Negative | 186270 - 188597 | 85787.4 |
| ydch family protein | CAY62_RS15705 | Not Available | Positive | 189014 - 189259 | 9485.18 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
