Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside diphosphate kinase regulator | CAY62_RS15610 | Not Available | Positive | 167517 - 167918 | 14726.0 |
| dnaj c-terminal domain-containing protein | CAY62_RS15615 | Not Available | Negative | 168055 - 168972 | 33496.6 |
| molecular chaperone dnak | CAY62_RS15620 | Not Available | Negative | 169107 - 171002 | 68239.8 |
| hsp20 family protein | CAY62_RS15625 | Not Available | Negative | 171143 - 171565 | 16055.0 |
| efflux rnd transporter periplasmic adaptor subunit | CAY62_RS15630 | Not Available | Positive | 172083 - 173318 | 45428.9 |
| efflux rnd transporter permease subunit | CAY62_RS15635 | Not Available | Positive | 173315 - 176428 | 116092.0 |
| duf2076 domain-containing protein | CAY62_RS15640 | Not Available | Negative | 176485 - 177300 | 28609.7 |
| eal domain-containing protein | CAY62_RS15645 | Not Available | Positive | 177759 - 178616 | 32688.2 |
| recq family atp-dependent dna helicase | CAY62_RS15650 | Not Available | Positive | 178750 - 179607 | 31936.0 |
| pepsy-associated tm helix domain-containing protein | CAY62_RS15655 | Not Available | Positive | 179746 - 180372 | 23431.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
