Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS15560 | Not Available | Negative | 157110 - 157631 | 19704.3 |
| hypothetical protein | CAY62_RS15565 | Not Available | Positive | 157870 - 158535 | 25273.1 |
| hypothetical protein | CAY62_RS15570 | Not Available | Positive | 158686 - 159129 | 17543.8 |
| aspartoacylase | CAY62_RS15575 | Not Available | Positive | 159225 - 160118 | 33677.7 |
| abc transporter atp-binding protein | CAY62_RS15580 | Not Available | Negative | 160264 - 161013 | 27516.6 |
| feccd family abc transporter permease | CAY62_RS15585 | Not Available | Negative | 161010 - 162059 | 37807.0 |
| abc transporter substrate-binding protein | CAY62_RS15590 | Not Available | Negative | 162056 - 163213 | 42942.8 |
| dna alkylation repair protein | CAY62_RS15595 | Not Available | Positive | 163790 - 164431 | 24745.5 |
| maoc family dehydratase | CAY62_RS15600 | Not Available | Negative | 164502 - 165185 | 26313.2 |
| oligopeptide:h+ symporter | CAY62_RS15605 | Not Available | Negative | 165684 - 167147 | 53466.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
