Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS21605 | Not Available | Negative | 148947 - 149120 | 6597.02 |
| hypothetical protein | CAY62_RS15515 | Not Available | Positive | 149366 - 149857 | 17887.8 |
| rhomboid family intramembrane serine protease | CAY62_RS15520 | Not Available | Positive | 149841 - 150413 | 21311.6 |
| duf1840 domain-containing protein | CAY62_RS15525 | Not Available | Positive | 150425 - 150745 | 11778.3 |
| duf2986 domain-containing protein | CAY62_RS15530 | Not Available | Positive | 150832 - 151011 | 6770.25 |
| penicillin-binding protein 2 | CAY62_RS15535 | Not Available | Positive | 151209 - 153167 | 73134.5 |
| sdr family nad(p)-dependent oxidoreductase | CAY62_RS15540 | Not Available | Negative | 153251 - 153973 | 26430.1 |
| ph domain-containing protein | CAY62_RS15545 | Not Available | Negative | 154091 - 154471 | 13932.0 |
| dna ligase | CAY62_RS15550 | Not Available | Negative | 154873 - 155784 | 34407.2 |
| pts transporter subunit iic | CAY62_RS15555 | Not Available | Positive | 156158 - 157105 | 32544.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
