Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotidyltransferase family protein | CAY62_RS15465 | Not Available | Negative | 138192 - 139292 | 42578.1 |
| bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | CAY62_RS15470 | Not Available | Positive | 139503 - 140030 | 19127.1 |
| histidine phosphatase family protein | CAY62_RS15475 | Not Available | Positive | 140093 - 140725 | 24542.2 |
| dead/deah box helicase | CAY62_RS15480 | Not Available | Negative | 140856 - 142085 | 45413.2 |
| cobyric acid synthase | CAY62_RS15485 | Not Available | Positive | 142225 - 143703 | 53377.2 |
| amino acid abc transporter permease | CAY62_RS15490 | Not Available | Negative | 143866 - 144771 | 34129.0 |
| transporter substrate-binding domain-containing protein | CAY62_RS15495 | Not Available | Negative | 144843 - 145658 | 30503.4 |
| amino acid abc transporter permease | CAY62_RS15500 | Not Available | Negative | 145772 - 146614 | 31218.6 |
| amino acid abc transporter atp-binding protein | CAY62_RS15505 | Not Available | Negative | 146625 - 147365 | 27517.4 |
| 3-deoxy-7-phosphoheptulonate synthase arog | CAY62_RS15510 | Not Available | Positive | 147801 - 148856 | 38654.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
