Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | CAY62_RS21975 | Not Available | Positive | 132635 - 132784 | 5503.68 |
| lysr family transcriptional regulator | CAY62_RS21980 | Not Available | Positive | 132711 - 133097 | 14235.4 |
| lysr substrate-binding domain-containing protein | CAY62_RS21985 | Not Available | Positive | 133118 - 133507 | 14349.2 |
| hypothetical protein | CAY62_RS15430 | Not Available | Positive | 133792 - 134064 | 9995.65 |
| m14-type cytosolic carboxypeptidase | CAY62_RS15435 | Not Available | Negative | 134291 - 135418 | 42900.3 |
| nudix hydrolase | CAY62_RS15440 | Not Available | Negative | 135461 - 135865 | 15133.0 |
| gnat family n-acetyltransferase | CAY62_RS15445 | Not Available | Positive | 135998 - 136516 | 19531.7 |
| hypothetical protein | CAY62_RS15450 | Not Available | Negative | 136506 - 136766 | 9577.83 |
| yccf domain-containing protein | CAY62_RS15455 | Not Available | Positive | 136971 - 137426 | 16315.2 |
| comea family dna-binding protein | CAY62_RS15460 | Not Available | Positive | 137602 - 138087 | 17176.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
