Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| recq family atp-dependent dna helicase | CAY62_RS15375 | Not Available | Positive | 122923 - 123574 | 23745.0 |
| voc family protein | CAY62_RS15380 | Not Available | Negative | 123625 - 124008 | 14824.7 |
| duf2058 domain-containing protein | CAY62_RS15385 | Not Available | Positive | 124182 - 124703 | 19378.2 |
| phospho-sugar mutase | CAY62_RS15390 | Not Available | Positive | 125031 - 126737 | 62109.5 |
| atpase | CAY62_RS15395 | Not Available | Positive | 126812 - 126991 | 6784.27 |
| rod shape-determining protein roda | CAY62_RS15400 | Not Available | Negative | 127063 - 128160 | 40186.1 |
| rok family protein | CAY62_RS15405 | Not Available | Positive | 128436 - 129347 | 32316.1 |
| adenosine deaminase | CAY62_RS15410 | Not Available | Negative | 129534 - 130541 | 37569.8 |
| bcr/cfla family efflux mfs transporter | CAY62_RS15415 | Not Available | Negative | 130845 - 132026 | 43822.1 |
| lipocalin-like domain-containing protein | CAY62_RS15420 | Not Available | Negative | 132085 - 132501 | 15994.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
