Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly protein sufb | CAY62_RS15270 | Not Available | Positive | 100659 - 102029 | 50832.5 |
| recq family atp-dependent dna helicase | CAY62_RS15275 | Not Available | Positive | 101986 - 102138 | 5828.12 |
| fe-s cluster assembly protein sufd | CAY62_RS15280 | Not Available | Positive | 102212 - 103387 | 44168.8 |
| recq family atp-dependent dna helicase | CAY62_RS15285 | Not Available | Positive | 103501 - 104600 | 41220.4 |
| sufe family protein | CAY62_RS15290 | Not Available | Positive | 104613 - 105002 | 14862.9 |
| hypothetical protein | CAY62_RS15295 | Not Available | Positive | 105157 - 105417 | 9951.82 |
| eal domain-containing protein | CAY62_RS15305 | Not Available | Positive | 106288 - 106980 | 26087.6 |
| nad(p)h-hydrate dehydratase | CAY62_RS15310 | Not Available | Positive | 107209 - 108678 | 52249.1 |
| lpp/opri family alanine-zipper lipoprotein | CAY62_RS15315 | Not Available | Negative | 108735 - 108989 | 8948.55 |
| sco family protein | CAY62_RS15320 | Not Available | Negative | 109348 - 109941 | 22788.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
