Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein | CAY62_RS14960 | Not Available | Positive | 31323 - 31835 | 18389.9 |
| n-acetylglucosamine-6-phosphate deacetylase | CAY62_RS14965 | Not Available | Negative | 31930 - 33063 | 41334.6 |
| mdr family mfs transporter | CAY62_RS14970 | Not Available | Positive | 33275 - 34657 | 49514.3 |
| ig-like domain-containing protein | CAY62_RS21435 | Not Available | Positive | 34865 - 44137 | 322311.0 |
| duf4832 domain-containing protein | CAY62_RS15035 | Not Available | Negative | 44254 - 45732 | 56635.6 |
| duf4832 domain-containing protein | CAY62_RS15040 | Not Available | Negative | 45934 - 47448 | 58161.3 |
| amp-binding protein | CAY62_RS15045 | Not Available | Negative | 47701 - 49326 | 60999.9 |
| murein l,d-transpeptidase family protein | CAY62_RS15050 | Not Available | Positive | 49651 - 50370 | 27412.1 |
| tetr/acrr family transcriptional regulator | CAY62_RS15055 | Not Available | Positive | 50584 - 51045 | 17563.1 |
| group ii intron reverse transcriptase/maturase | CAY62_RS15060 | Not Available | Positive | 51665 - 52957 | 49752.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
