Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxymuconolactone decarboxylase family protein | CAY62_RS21140 | Not Available | Positive | 70377 - 70712 | 11886.2 |
| helix-turn-helix domain-containing protein | CAY62_RS21145 | Not Available | Negative | 70760 - 71302 | 20015.8 |
| cupin domain-containing protein | CAY62_RS21150 | Not Available | Negative | 71371 - 71679 | 11188.6 |
| dead/deah box helicase | CAY62_RS14825 | Not Available | Positive | 28 - 1971 | 72792.2 |
| cyclopropane fatty acyl phospholipid synthase | CAY62_RS14830 | Not Available | Positive | 2326 - 3477 | 43668.1 |
| tldd/pmba family protein | CAY62_RS14835 | Not Available | Negative | 3590 - 4933 | 48163.2 |
| tldd/pmba family protein | CAY62_RS14840 | Not Available | Negative | 4933 - 6318 | 49680.0 |
| cobw family gtp-binding protein | CAY62_RS14845 | Not Available | Negative | 6473 - 7462 | 36761.8 |
| modd protein | CAY62_RS14850 | Not Available | Positive | 7653 - 8513 | 31107.4 |
| paraquat-inducible protein a | CAY62_RS14855 | Not Available | Positive | 8844 - 10187 | 49735.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
