Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rpn family recombination-promoting nuclease/putative transposase | CAY62_RS21090 | Not Available | Negative | 59494 - 60450 | 36647.5 |
| yfbu family protein | CAY62_RS21095 | Not Available | Positive | 61108 - 61629 | 21034.1 |
| hypothetical protein | CAY62_RS21100 | Not Available | Positive | 61629 - 62111 | 18431.7 |
| hypothetical protein | CAY62_RS21105 | Not Available | Negative | 62637 - 63266 | 23230.1 |
| hypothetical protein | CAY62_RS21110 | Not Available | Negative | 63394 - 63957 | 21528.0 |
| clbs/dfsb family four-helix bundle protein | CAY62_RS21115 | Not Available | Negative | 64148 - 64492 | 13800.6 |
| hypothetical protein | CAY62_RS21120 | Not Available | Positive | 65108 - 65404 | 11225.3 |
| is91 family transposase | CAY62_RS21125 | Not Available | Positive | 65413 - 66621 | 47293.8 |
| yopj/avra family t3ss effector serine/threonine acetyltransferase | CAY62_RS21130 | Not Available | Negative | 67633 - 68508 | 32799.6 |
| is630 family transposase | CAY62_RS21135 | Not Available | Positive | 68827 - 69816 | 37488.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
