Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS20940 | Not Available | Positive | 28195 - 28407 | 8437.93 |
| type-f conjugative transfer system pilin assembly protein trbc | CAY62_RS20945 | Not Available | Positive | 28370 - 29020 | 23609.4 |
| type-f conjugative transfer system mating-pair stabilization protein tran | CAY62_RS20950 | Not Available | Positive | 29017 - 30864 | 68268.3 |
| type-f conjugative transfer system pilin assembly protein traf | CAY62_RS20955 | Not Available | Positive | 30861 - 31631 | 28846.7 |
| hypothetical protein | CAY62_RS20960 | Not Available | Positive | 31645 - 31935 | 11062.3 |
| conjugal transfer protein traf | CAY62_RS20965 | Not Available | Positive | 32001 - 32429 | 15595.0 |
| is21-like element helper atpase istb | CAY62_RS20970 | Not Available | Negative | 32482 - 33240 | 28681.8 |
| is21 family transposase | CAY62_RS20975 | Not Available | Negative | 33227 - 34270 | 40000.6 |
| conjugal transfer protein trah | CAY62_RS20980 | Not Available | Positive | 34432 - 35802 | 50022.6 |
| conjugal transfer mating-pair stabilization protein trag | CAY62_RS20985 | Not Available | Positive | 35806 - 38514 | 98850.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
