Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type-f conjugative transfer system secretin trak | CAY62_RS20895 | Not Available | Positive | 18710 - 19441 | 26491.0 |
| trab/virb10 family protein | CAY62_RS20900 | Not Available | Positive | 19445 - 20989 | 56613.1 |
| type iv conjugative transfer system lipoprotein trav | CAY62_RS20905 | Not Available | Positive | 21003 - 21419 | 14888.0 |
| type iv secretion system protein trac | CAY62_RS20910 | Not Available | Positive | 21466 - 24078 | 98463.8 |
| trbi f-type domain-containing protein | CAY62_RS20915 | Not Available | Positive | 24065 - 24421 | 13041.9 |
| type-f conjugative transfer system protein traw | CAY62_RS20920 | Not Available | Positive | 24436 - 25149 | 27125.7 |
| nuclease-related domain-containing protein | CAY62_RS20925 | Not Available | Positive | 25311 - 26009 | 26820.6 |
| hypothetical protein | CAY62_RS20930 | Not Available | Positive | 26019 - 26324 | 11735.3 |
| conjugal transfer pilus assembly protein trau | CAY62_RS20935 | Not Available | Positive | 26392 - 27402 | 37500.9 |
| hypothetical protein | CAY62_RS22245 | Not Available | Positive | 27797 - 27928 | 4796.89 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
