Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hnh endonuclease | CAY62_RS19200 | Not Available | Negative | 974645 - 975022 | 14350.2 |
| is630 family transposase | CAY62_RS19205 | Not Available | Negative | 975019 - 976050 | 39175.8 |
| hypothetical protein | CAY62_RS19210 | Not Available | Negative | 976083 - 976580 | 18871.5 |
| iron-containing alcohol dehydrogenase | CAY62_RS19215 | Not Available | Negative | 976765 - 977913 | 41760.7 |
| arac family transcriptional regulator | CAY62_RS19220 | Not Available | Positive | 978073 - 978957 | 33340.1 |
| hypothetical protein | CAY62_RS19225 | Not Available | Positive | 978969 - 979223 | 9963.75 |
| txe/yoeb family addiction module toxin | CAY62_RS19230 | Not Available | Negative | 979263 - 979523 | 10319.4 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | CAY62_RS19235 | Not Available | Negative | 979513 - 979773 | 9719.4 |
| rlua family pseudouridine synthase | CAY62_RS19240 | Not Available | Negative | 979967 - 981649 | 63997.5 |
| hypothetical protein | CAY62_RS19245 | Not Available | Negative | 981724 - 982248 | 19910.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
