Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS19150 | Not Available | Positive | 965993 - 966934 | 35337.5 |
| carbamoyltransferase hypf | CAY62_RS19155 | Not Available | Positive | 967089 - 969449 | 87961.2 |
| hypc/hybg/hupf family hydrogenase formation chaperone | CAY62_RS19160 | Not Available | Positive | 969479 - 969733 | 9323.46 |
| hydrogenase formation protein hypd | CAY62_RS19165 | Not Available | Positive | 969733 - 970857 | 41213.1 |
| hydrogenase expression/formation protein hype | CAY62_RS19170 | Not Available | Positive | 970868 - 971860 | 35670.8 |
| hypothetical protein | CAY62_RS19175 | Not Available | Negative | 971944 - 972243 | 11378.5 |
| is200/is605 family transposase | CAY62_RS19180 | Not Available | Negative | 972304 - 972732 | 16173.8 |
| rna-guided endonuclease insq/tnpb family protein | CAY62_RS19185 | Not Available | Positive | 972790 - 973932 | 43248.1 |
| lysr substrate-binding domain-containing protein | CAY62_RS22230 | Not Available | Positive | 974010 - 974297 | 10666.7 |
| lysr substrate-binding domain-containing protein | CAY62_RS22235 | Not Available | Positive | 974272 - 974583 | 11700.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
