Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3157 family protein | CAY62_RS19010 | Not Available | Positive | 938669 - 939259 | 21553.1 |
| response regulator | CAY62_RS19015 | Not Available | Positive | 939376 - 940101 | 27185.7 |
| pts transporter subunit eiib | CAY62_RS19020 | Not Available | Negative | 940164 - 940478 | 11652.5 |
| atp-binding protein | CAY62_RS19025 | Not Available | Positive | 940727 - 942172 | 54830.9 |
| abc transporter substrate-binding protein | CAY62_RS19030 | Not Available | Positive | 942184 - 943437 | 45970.0 |
| yfcc family protein | CAY62_RS19035 | Not Available | Negative | 943444 - 944850 | 49848.5 |
| nad/nadp-dependent octopine/nopaline dehydrogenase family protein | CAY62_RS19040 | Not Available | Negative | 944921 - 946030 | 40235.4 |
| lysr family transcriptional regulator | CAY62_RS19045 | Not Available | Negative | 946233 - 947165 | 34884.3 |
| stas/sec14 domain-containing protein | CAY62_RS19050 | Not Available | Positive | 947350 - 947730 | 14370.1 |
| outer membrane beta-barrel protein | CAY62_RS19055 | Not Available | Positive | 947894 - 948616 | 26349.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
