Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae KC-Na-1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Photobacterium damselae subsp. damselae strain KC-Na-1 plasmid
Gene Summary
Adenine Count
24830 bp
Thymine Count
23536 bp
Guanine Count
16496 bp
Cytosine Count
16140 bp
Genome Length
81002 bp
Protein-coding Genes
81 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
5
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CAY62_RS20840 | Not Available | Positive | 9837 - 10133 | 11195.3 |
| clbs/dfsb family four-helix bundle protein | CAY62_RS20845 | Not Available | Positive | 10142 - 11351 | 46855.4 |
| hypothetical protein | CAY62_RS20850 | Not Available | Positive | 11790 - 12002 | 7653.23 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | CAY62_RS20855 | Not Available | Positive | 12075 - 13022 | 34970.8 |
| hypothetical protein | CAY62_RS22240 | Not Available | Positive | 13178 - 13312 | 5090.13 |
| clbs/dfsb family four-helix bundle protein | CAY62_RS20865 | Not Available | Positive | 13483 - 14260 | 30129.4 |
| hypothetical protein | CAY62_RS20875 | Not Available | Negative | 15170 - 15994 | 32196.9 |
| hypothetical protein | CAY62_RS20880 | Not Available | Positive | 17458 - 17790 | 11429.1 |
| type iv conjugative transfer system protein tral | CAY62_RS20885 | Not Available | Positive | 17790 - 18095 | 11747.6 |
| type iv conjugative transfer system protein trae | CAY62_RS20890 | Not Available | Positive | 18105 - 18668 | 20803.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
