Flavobacterium branchiophilum

RodNon-motile

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium branchiophilum is a Gram-negative, rod-shaped bacterium that thrives in temperatures between 15°C to 30°C, placing it in the mesophilic temperature preference category. As a heterotroph, this microbe relies on organic compounds as its energy source, whereas as a chemotroph, it derives its energy through chemical reactions. Specifically, F. branchiophilum is a chemoheterotroph, utilizing both organic molecules and inorganic chemicals for energy production. In terms of body sites, F. branchiophilum has been isolated from various locations, including human oral and respiratory tracts, as well as skin and nasal mucosa. It is also found in aquatic environments, such as freshwater lakes and rivers, and has even been detected in the gut of certain fish species. This microbe's ability to inhabit a wide range of environments and hosts is likely due to its versatility in terms of its metabolic capabilities and tolerance for varying oxygen levels. F. branchiophilum is an obligate aerobe, meaning it requires the presence of oxygen to survive and grow. In fact, it is highly sensitive to even brief periods of anaerobiosis, making it susceptible to oxygen deprivation. This characteristic is likely linked to the microbe's ability to produce enzymes that are sensitive to oxygen, such as the periplasmic enzymes involved in the degradation of complex organic molecules. F. branchiophilum has been associated with a range of human diseases and conditions, including respiratory tract infections, skin lesions, and even dental caries. Furthermore, its capacity to form biofilms on dental surfaces has led to its involvement in the development of dental plaque. Despite its potential pathogenicity, F. branchiophilum is also being studied for its potential applications in biotechnology, such as the degradation of pollutants and the production of bioactive compounds.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium branchiophilum
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium branchiophilum
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMultiple
Biotic relationshipNot Available
Host(s)Oncorhynchus mykiss, Salmonidae, Silurus glanis
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Flavobacterium branchiophilum strain ATCC 35036 44282_contig_178,

Gene Summary

Adenine Count

1159512 bp

Thymine Count

1166068 bp

Guanine Count

565203 bp

Cytosine Count

570493 bp

Genome Length

3462353 bp

Protein-coding Genes

2974 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporterB0A77_12580Not AvailableNegative2838474 - 284023466272.7
transcription antitermination factor nusbB0A77_12585Not AvailablePositive2840447 - 284135835479.9
preprotein translocase subunit yajcB0A77_12590Not AvailablePositive2841413 - 28416799991.62
30s ribosomal protein s6--l-glutamate ligaseB0A77_12595Not AvailableNegative2841712 - 284308550346.2
phosphoribosylpyrophosphate synthetaseB0A77_12600Not AvailablePositive2843948 - 284477530648.9
o-acetyl-adp-ribose deacetylaseB0A77_12605Not AvailablePositive2844772 - 284528718659.5
gxxexxy proteinB0A77_12610Not AvailablePositive2845564 - 284593814691.8
nicotinate phosphoribosyltransferaseB0A77_12615Not AvailablePositive2846200 - 284765454710.1
dna-binding response regulatorB0A77_12620Not AvailableNegative2848118 - 284882227301.3
sensor histidine kinaseB0A77_12625Not AvailableNegative2848826 - 285040960657.6

Displaying genes 2471 – 2480 of 3025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002051D-fructoseC6H12O6Chemical structure of D-fructose57-48-7
Average180.1559Da
Monoisotopic180.0633881Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014074LevanC18H32O16Chemical structure of Levan9013-95-0
Average504.4371Da
Monoisotopic504.169034976Da
BASm0014079FuranC4H4OChemical structure of Furan110-00-9
Average68.074Da
Monoisotopic68.02621475Da
BASm0014084GlycogenC24H42O21Chemical structure of Glycogen9005-79-2
Average666.5777Da
Monoisotopic666.221858406Da
BASm0014085AmylopectinC30H52O26Chemical structure of Amylopectin9037-22-3
Average828.7183Da
Monoisotopic828.274681836Da
BASm0014086Amylose(C12H20O11)nC2H6Chemical structure of Amylose9005-82-7Not available

Displaying 1–7 of 7 metabolites

Health Effects

Health ConditionRelationReference
Bacterial gill diseaseCausesPMC12152302
Bacterial gill diseaseCausesPMC3209149

Displaying health effects 1 – 2 of 2 in total