Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (adenine(2030)-n(6))-methyltransferase rlmj | APT59_RS04235 | Not Available | Positive | 922474 - 923310 | 31356.6 |
| peptide-methionine (s)-s-oxide reductase msra | APT59_RS04240 | Not Available | Negative | 923641 - 924300 | 23667.0 |
| bifunctional diguanylate cyclase/phosphodiesterase | APT59_RS04245 | Not Available | Negative | 924381 - 926987 | 96699.8 |
| dihydrolipoyllysine-residue acetyltransferase | APT59_RS04250 | Not Available | Negative | 927270 - 929258 | 68187.5 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | APT59_RS04255 | Not Available | Negative | 929287 - 931929 | 99607.6 |
| bifunctional | APT59_RS04260 | Not Available | Positive | 932259 - 935219 | 110548.0 |
| lipopolysaccharide heptosyltransferase ii | APT59_RS04265 | Not Available | Positive | 935333 - 936367 | 38108.1 |
| lipopolysaccharide heptosyltransferase i | APT59_RS04270 | Not Available | Positive | 936368 - 937375 | 37104.3 |
| glycosyltransferase family 4 protein | APT59_RS04275 | Not Available | Positive | 937372 - 938490 | 41871.4 |
| lipopolysaccharide core heptose(i) kinase rfap | APT59_RS04280 | Not Available | Positive | 938487 - 939293 | 30668.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
