Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Sulfur transfer protein, dsrc | APT59_RS09735 | Not Available | Negative | 2129527 - 2129841 | 11638.1 |
| sulfurtransferase complex subunit tusb | APT59_RS09740 | Not Available | Negative | 2129843 - 2130142 | 10571.6 |
| sulfurtransferase complex subunit tusc | APT59_RS09745 | Not Available | Negative | 2130139 - 2130495 | 12294.0 |
| sulfurtransferase complex subunit tusd | APT59_RS09750 | Not Available | Negative | 2130497 - 2130892 | 14462.3 |
| bax inhibitor-1/ycca family protein | APT59_RS09755 | Not Available | Negative | 2130942 - 2131610 | 24130.8 |
| Trna-ser; | Not Available | Not Available | Positive | 2131738 - 2131825 | Not Available |
| Attl | Not Available | Not Available | Positive | 2131766 - 2131840 | Not Available |
| Integrase | APT59_RS09765 | Not Available | Negative | 2131946 - 2132995 | 40040.2 |
| Hypothetical protein | APT59_RS09770 | Not Available | Negative | 2132997 - 2133239 | 9368.21 |
| Hypothetical protein | APT59_RS09775 | Not Available | Negative | 2133354 - 2133746 | 13802.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
