Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chaperonin groel | APT59_RS04185 | Not Available | Positive | 908827 - 910467 | 56991.9 |
| response regulator transcription factor | APT59_RS04190 | Not Available | Positive | 910673 - 911347 | 25304.6 |
| hamp domain-containing sensor histidine kinase | APT59_RS04195 | Not Available | Positive | 911350 - 912639 | 47980.9 |
| class i sam-dependent methyltransferase | APT59_RS04200 | Not Available | Positive | 912730 - 913416 | 26230.3 |
| lipopolysaccharide kinase inaa family protein | APT59_RS04205 | Not Available | Positive | 913444 - 914142 | 26605.7 |
| hypothetical protein | APT59_RS04210 | Not Available | Positive | 914139 - 914357 | 7697.3 |
| nicotinate phosphoribosyltransferase | APT59_RS04215 | Not Available | Positive | 914441 - 915643 | 45662.9 |
| protein adenylyltransferase selo | APT59_RS04220 | Not Available | Negative | 915671 - 917131 | 54937.1 |
| mechanosensitive channel msck | APT59_RS04225 | Not Available | Negative | 917162 - 920506 | 123775.0 |
| potassium/proton antiporter | APT59_RS04230 | Not Available | Negative | 920605 - 922344 | 61482.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
