Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cob(i)yrinic acid a,c-diamide adenosyltransferase | APT59_RS04135 | Not Available | Negative | 899198 - 899758 | 20325.3 |
| atp-binding protein | APT59_RS04140 | Not Available | Negative | 899780 - 901801 | 75189.0 |
| putative 2-dehydropantoate 2-reductase | APT59_RS04145 | Not Available | Negative | 901845 - 902759 | 33031.7 |
| yajq family cyclic di-gmp-binding protein | APT59_RS04150 | Not Available | Positive | 902883 - 903362 | 17935.7 |
| mechanosensitive ion channel family protein | APT59_RS04155 | Not Available | Positive | 903462 - 904334 | 31473.5 |
| ampg family muropeptide mfs transporter | APT59_RS04160 | Not Available | Negative | 904362 - 906083 | 61922.3 |
| mgmt family protein | APT59_RS04165 | Not Available | Negative | 906112 - 906450 | 12404.8 |
| duf481 domain-containing protein | APT59_RS04170 | Not Available | Positive | 906687 - 907694 | 38027.4 |
| fxsa family protein | APT59_RS04175 | Not Available | Positive | 907846 - 908304 | 16463.8 |
| co-chaperone groes | APT59_RS04180 | Not Available | Positive | 908494 - 908787 | 10122.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
