Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m4 family metallopeptidase | APT59_RS04085 | Not Available | Positive | 890356 - 891417 | 38082.5 |
| protealysin inhibitor emfourin | APT59_RS04090 | Not Available | Positive | 891430 - 891765 | 12659.2 |
| mbl fold metallo-hydrolase | APT59_RS04095 | Not Available | Negative | 891769 - 892800 | 38491.8 |
| pseudouridine synthase | APT59_RS04100 | Not Available | Positive | 892864 - 893478 | 22962.7 |
| chemotaxis protein | APT59_RS04105 | Not Available | Negative | 893488 - 894453 | 35744.9 |
| lyse/argo family amino acid transporter | APT59_RS04110 | Not Available | Negative | 894516 - 895115 | 21228.4 |
| lysr family transcriptional regulator argp | APT59_RS04115 | Not Available | Positive | 895214 - 896101 | 32226.0 |
| nad(p)-dependent oxidoreductase | APT59_RS04120 | Not Available | Positive | 896185 - 897129 | 34614.4 |
| hypothetical protein | APT59_RS04125 | Not Available | Positive | 897302 - 898156 | 30991.5 |
| hypothetical protein | APT59_RS04130 | Not Available | Negative | 898137 - 899201 | 40646.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
