Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| y-family dna polymerase | APT59_RS04055 | Not Available | Positive | 878895 - 880166 | 46679.0 |
| d-serine/d-alanine/glycine transporter | APT59_RS04060 | Not Available | Negative | 880182 - 881564 | 50108.5 |
| duf4398 domain-containing protein | APT59_RS22660 | Not Available | Positive | 881923 - 882222 | 11354.5 |
| duf4398 domain-containing protein | APT59_RS04065 | Not Available | Positive | 882370 - 883989 | 58161.5 |
| helix-turn-helix transcriptional regulator | APT59_RS22055 | Not Available | Negative | 884791 - 885279 | 17839.1 |
| hypothetical protein | APT59_RS04070 | Not Available | Positive | 885387 - 885854 | 16401.0 |
| recombinase family protein | APT59_RS04075 | Not Available | Negative | 885918 - 886481 | 20399.7 |
| hypothetical protein | APT59_RS22060 | Not Available | Positive | 886714 - 888099 | 51807.9 |
| site-specific integrase | APT59_RS22065 | Not Available | Negative | 888138 - 890060 | 73602.0 |
| Trna-gly | Not Available | Not Available | Positive | 890149 - 890222 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
