Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid deaminase | APT59_RS04005 | Not Available | Negative | 869108 - 870316 | 42819.6 |
| iclr family transcriptional regulator | APT59_RS04010 | Not Available | Negative | 870313 - 871086 | 28318.9 |
| rida family protein | APT59_RS04015 | Not Available | Negative | 871101 - 871487 | 13888.6 |
| amino acid abc transporter atp-binding protein | APT59_RS04020 | Not Available | Negative | 871515 - 872291 | 28673.8 |
| amino acid abc transporter permease | APT59_RS04025 | Not Available | Negative | 872288 - 872950 | 24072.0 |
| amino acid abc transporter permease | APT59_RS04030 | Not Available | Negative | 872961 - 873623 | 24363.8 |
| transporter substrate-binding domain-containing protein | APT59_RS04035 | Not Available | Negative | 873671 - 874450 | 28514.7 |
| amidohydrolase family protein | APT59_RS04040 | Not Available | Negative | 874719 - 876179 | 51801.6 |
| methyl-accepting chemotaxis protein | APT59_RS04045 | Not Available | Positive | 876356 - 878374 | 71707.4 |
| lexa family transcriptional regulator | APT59_RS04050 | Not Available | Positive | 878471 - 878902 | 15665.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
