Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter permease | APT59_RS03905 | Not Available | Positive | 848147 - 849247 | 40254.3 |
| amino acid abc transporter atp-binding protein | APT59_RS03910 | Not Available | Positive | 849258 - 850025 | 28946.4 |
| phosphatidylcholine synthase | APT59_RS03915 | Not Available | Positive | 850291 - 850983 | 25778.4 |
| giy-yig nuclease family protein | APT59_RS03920 | Not Available | Positive | 850986 - 851306 | 11663.0 |
| glutathione s-transferase family protein | APT59_RS03925 | Not Available | Positive | 851294 - 852229 | 34176.2 |
| flavin reductase family protein | APT59_RS03930 | Not Available | Negative | 852290 - 852910 | 22591.8 |
| metallophosphoesterase family protein | APT59_RS03935 | Not Available | Negative | 852921 - 853400 | 17157.8 |
| hybrid-cluster nad(p)-dependent oxidoreductase | APT59_RS03940 | Not Available | Negative | 853681 - 854799 | 40298.1 |
| srpbcc family protein | APT59_RS03945 | Not Available | Negative | 854809 - 856065 | 46575.8 |
| lysr substrate-binding domain-containing protein | APT59_RS03950 | Not Available | Negative | 856188 - 857111 | 34291.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
