Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peroxide stress protein yaaa | APT59_RS03855 | Not Available | Negative | 838132 - 838911 | 29416.1 |
| phoh family protein | APT59_RS03860 | Not Available | Positive | 839266 - 840657 | 51634.0 |
| cyclic pyranopterin monophosphate synthase moac | APT59_RS03865 | Not Available | Positive | 840744 - 841220 | 16870.5 |
| moad/this family protein | APT59_RS03870 | Not Available | Positive | 841217 - 841468 | 9219.96 |
| molybdopterin synthase catalytic subunit moae | APT59_RS03875 | Not Available | Positive | 841471 - 841926 | 16651.7 |
| atp-dependent rna helicase rhlb | APT59_RS03880 | Not Available | Negative | 842070 - 843548 | 54735.8 |
| ggdef domain-containing protein | APT59_RS03885 | Not Available | Negative | 843644 - 844594 | 35418.9 |
| alpha/beta hydrolase | APT59_RS03890 | Not Available | Negative | 844793 - 845437 | 22902.3 |
| amino acid abc transporter substrate-binding protein | APT59_RS03895 | Not Available | Positive | 845821 - 846849 | 36749.7 |
| amino acid abc transporter permease | APT59_RS03900 | Not Available | Positive | 846950 - 848137 | 42854.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
