Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein | APT59_RS03805 | Not Available | Positive | 827561 - 828715 | 44365.2 |
| acyltransferase | APT59_RS03810 | Not Available | Positive | 828864 - 830096 | 46607.1 |
| putative quinol monooxygenase | APT59_RS03815 | Not Available | Negative | 830093 - 830461 | 13550.1 |
| ketosteroid isomerase-related protein | APT59_RS03820 | Not Available | Negative | 830536 - 830937 | 14830.4 |
| gnat family n-acetyltransferase | APT59_RS03825 | Not Available | Positive | 831043 - 831630 | 22431.0 |
| carbon-nitrogen hydrolase family protein | APT59_RS03830 | Not Available | Positive | 831627 - 832511 | 32477.9 |
| fumarate hydratase | APT59_RS03835 | Not Available | Negative | 832557 - 834077 | 54577.9 |
| d-glycerate dehydrogenase | APT59_RS03840 | Not Available | Negative | 834308 - 835282 | 35071.3 |
| tigr01459 family had-type hydrolase | APT59_RS03845 | Not Available | Negative | 835308 - 836171 | 30809.6 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | APT59_RS03850 | Not Available | Negative | 836288 - 837748 | 53438.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
