Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Virion morphogenesis protein | APT59_RS11055 | Not Available | Positive | 2389071 - 2389523 | 17304.2 |
| hypothetical protein | APT59_RS22415 | Not Available | Negative | 2389526 - 2390263 | 26704.4 |
| Baseplate assembly protein v | APT59_RS11060 | Not Available | Positive | 2390378 - 2390971 | 20672.4 |
| Baseplate assembly protein | APT59_RS11065 | Not Available | Positive | 2390968 - 2391312 | 12396.1 |
| Baseplate assembly protein | APT59_RS11070 | Not Available | Positive | 2391309 - 2392217 | 31918.2 |
| Tail protein i | APT59_RS11075 | Not Available | Positive | 2392221 - 2392835 | 22166.7 |
| Tail protein | APT59_RS11080 | Not Available | Positive | 2392832 - 2394490 | 57100.8 |
| Putative tail fiber | APT59_RS11085 | Not Available | Positive | 2394506 - 2395075 | 20584.2 |
| Enoyl-coa hydratase/carnithine racemase-like protein | APT59_RS11090 | Not Available | Positive | 2395072 - 2395497 | 15784.9 |
| hypothetical protein | APT59_RS11095 | Not Available | Positive | 2395693 - 2396496 | 30988.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
