Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetamidase/formamidase family protein | APT59_RS03605 | Not Available | Negative | 782067 - 782999 | 32806.1 |
| apc family permease | APT59_RS03610 | Not Available | Negative | 783026 - 784408 | 49512.6 |
| luxr family transcriptional regulator | APT59_RS03615 | Not Available | Positive | 784563 - 785327 | 27710.2 |
| nuclear transport factor 2 family protein | APT59_RS03620 | Not Available | Positive | 785416 - 785886 | 18276.2 |
| lysr family transcriptional regulator | APT59_RS03625 | Not Available | Positive | 785960 - 786865 | 33088.3 |
| caib/baif coa-transferase family protein | APT59_RS03630 | Not Available | Positive | 786973 - 788163 | 42140.9 |
| hydroxymethylglutaryl-coa lyase | APT59_RS03635 | Not Available | Positive | 788160 - 789086 | 32340.0 |
| mfs transporter | APT59_RS03640 | Not Available | Positive | 789161 - 790546 | 49325.4 |
| multidrug efflux rnd transporter permease subunit | APT59_RS03645 | Not Available | Negative | 790549 - 793647 | 109759.0 |
| efflux rnd transporter periplasmic adaptor subunit | APT59_RS03650 | Not Available | Negative | 793647 - 794798 | 41014.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
