Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfate transporter cysz | APT59_RS03555 | Not Available | Negative | 767820 - 768572 | 27969.2 |
| thioredoxin-disulfide reductase | APT59_RS03560 | Not Available | Positive | 768871 - 769845 | 34364.8 |
| serine hydroxymethyltransferase | APT59_RS03565 | Not Available | Negative | 770051 - 771304 | 45004.6 |
| eal domain-containing protein | APT59_RS03570 | Not Available | Negative | 771428 - 775615 | 156734.0 |
| energy-dependent translational throttle protein etta | APT59_RS03575 | Not Available | Positive | 775827 - 777491 | 61195.8 |
| molybdate abc transporter substrate-binding protein | APT59_RS03580 | Not Available | Positive | 777617 - 778372 | 26204.4 |
| molybdate abc transporter permease subunit | APT59_RS03585 | Not Available | Positive | 778377 - 779054 | 24176.2 |
| molybdenum abc transporter atp-binding protein | APT59_RS03590 | Not Available | Positive | 779051 - 780127 | 38549.3 |
| lysr family transcriptional regulator | APT59_RS03595 | Not Available | Negative | 780119 - 781045 | 34169.6 |
| dmt family transporter | APT59_RS03600 | Not Available | Positive | 781184 - 782101 | 32148.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
