Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| twitching motility response regulator pilh | APT59_RS03405 | Not Available | Positive | 728990 - 729355 | 13312.1 |
| chemotaxis protein chew | APT59_RS03410 | Not Available | Positive | 729405 - 729941 | 19990.4 |
| methyl-accepting chemotaxis protein | APT59_RS03415 | Not Available | Positive | 730103 - 732133 | 71838.1 |
| protein-glutamate o-methyltransferase cher | APT59_RS03420 | Not Available | Positive | 732195 - 733043 | 32180.8 |
| hpt domain-containing protein | APT59_RS03425 | Not Available | Positive | 733055 - 740119 | 255492.0 |
| chemotaxis protein cheb | APT59_RS03430 | Not Available | Positive | 740112 - 741131 | 36547.6 |
| chemotaxis protein chew | APT59_RS03435 | Not Available | Positive | 741143 - 741613 | 16677.5 |
| had-ia family hydrolase | APT59_RS03440 | Not Available | Negative | 741610 - 742269 | 22779.2 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | APT59_RS03445 | Not Available | Negative | 742338 - 743066 | 26283.7 |
| adenosylmethionine--8-amino-7-oxononanoate transaminase | APT59_RS03450 | Not Available | Negative | 743080 - 744480 | 52474.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
