Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Major capsid protein, p2 family | APT59_RS11010 | Not Available | Positive | 2384150 - 2385166 | 37574.7 |
| Terminase endonuclease subunit | APT59_RS11015 | Not Available | Positive | 2385170 - 2385871 | 24893.9 |
| Head completion/stabilization protein | APT59_RS11020 | Not Available | Positive | 2385974 - 2386435 | 16493.3 |
| Tail protein | APT59_RS11025 | Not Available | Positive | 2386435 - 2386659 | 7774.33 |
| Holin | APT59_RS11030 | Not Available | Positive | 2386682 - 2386996 | 10987.5 |
| Gp43, bacteriophage-acquired protein | APT59_RS11035 | Not Available | Positive | 2386993 - 2387817 | 29585.2 |
| hypothetical protein | APT59_RS11040 | Not Available | Positive | 2387814 - 2388020 | 7480.95 |
| Lysb familyglysis regulatory protein | APT59_RS22720 | Not Available | Positive | 2388017 - 2388370 | 13499.2 |
| Hypothetical protein | APT59_RS22640 | Not Available | Positive | 2388294 - 2388551 | 8840.51 |
| Tail protein | APT59_RS11050 | Not Available | Positive | 2388548 - 2389078 | 19492.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
