Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpoh | APT59_RS03255 | Not Available | Positive | 701549 - 702403 | 32528.7 |
| monofunctional biosynthetic peptidoglycan transglycosylase | APT59_RS03260 | Not Available | Negative | 702827 - 703528 | 26664.1 |
| duf423 domain-containing protein | APT59_RS03265 | Not Available | Positive | 703597 - 703974 | 13157.7 |
| sulfur carrier protein this | APT59_RS03270 | Not Available | Positive | 704068 - 704268 | 7028.48 |
| thiazole synthase | APT59_RS03275 | Not Available | Positive | 704288 - 705070 | 27742.9 |
| trna (guanosine(46)-n7)-methyltransferase trmb | APT59_RS03280 | Not Available | Positive | 705178 - 705849 | 25072.2 |
| bifunctional diguanylate cyclase/phosphodiesterase | APT59_RS03285 | Not Available | Positive | 706026 - 707732 | 62194.5 |
| duf3392 family protein | APT59_RS03290 | Not Available | Negative | 707729 - 708055 | 11581.4 |
| radical sam family heme chaperone hemw | APT59_RS03295 | Not Available | Negative | 708070 - 709221 | 42042.8 |
| rdgb/ham1 family non-canonical purine ntp pyrophosphatase | APT59_RS03300 | Not Available | Negative | 709218 - 709811 | 21059.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
