Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | APT59_RS03205 | Not Available | Positive | 692337 - 692693 | 12040.7 |
| yfhl family 4fe-4s dicluster ferredoxin | APT59_RS03210 | Not Available | Negative | 692717 - 692968 | 9226.82 |
| pantetheine-phosphate adenylyltransferase | APT59_RS03215 | Not Available | Negative | 693068 - 693553 | 17787.6 |
| hydrolase | APT59_RS03220 | Not Available | Negative | 693653 - 694657 | 37512.5 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | APT59_RS03225 | Not Available | Negative | 694654 - 695223 | 20784.8 |
| pitrilysin family protein | APT59_RS03230 | Not Available | Negative | 695225 - 696664 | 50595.9 |
| pitrilysin family protein | APT59_RS03235 | Not Available | Negative | 696661 - 698022 | 50175.9 |
| signal recognition particle-docking protein ftsy | APT59_RS03240 | Not Available | Positive | 698225 - 699709 | 52298.9 |
| cell division atp-binding protein ftse | APT59_RS03245 | Not Available | Positive | 699706 - 700380 | 24822.2 |
| permease-like cell division protein ftsx | APT59_RS03250 | Not Available | Positive | 700377 - 701387 | 36816.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
