Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | APT59_RS03155 | Not Available | Positive | 676075 - 677667 | 55345.3 |
| glutamate synthase large subunit | APT59_RS03160 | Not Available | Positive | 677883 - 682331 | 161746.0 |
| fad-dependent oxidoreductase | APT59_RS03165 | Not Available | Positive | 682422 - 683840 | 51699.1 |
| uroporphyrinogen decarboxylase | APT59_RS03170 | Not Available | Positive | 684124 - 685191 | 38833.7 |
| ldh family oxidoreductase | APT59_RS03175 | Not Available | Positive | 685284 - 686297 | 35373.4 |
| mfs transporter | APT59_RS03180 | Not Available | Positive | 686409 - 687932 | 56027.2 |
| rna pyrophosphohydrolase | APT59_RS03185 | Not Available | Positive | 688124 - 688597 | 18528.3 |
| phosphoenolpyruvate--protein phosphotransferase | APT59_RS03190 | Not Available | Positive | 688709 - 690988 | 83504.2 |
| sulfite exporter taue/safe family protein | APT59_RS03195 | Not Available | Positive | 691038 - 691460 | 14859.7 |
| prolipoprotein diacylglyceryl transferase | APT59_RS03200 | Not Available | Positive | 691439 - 692251 | 30483.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
