Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thermonuclease family protein | APT59_RS03105 | Not Available | Positive | 664469 - 665296 | 30492.5 |
| malic enzyme-like nad(p)-binding protein | APT59_RS03110 | Not Available | Positive | 665409 - 666677 | 45305.6 |
| penicillin-binding protein 1a | APT59_RS03115 | Not Available | Negative | 666731 - 669151 | 89095.9 |
| pilus assembly protein pilm | APT59_RS03120 | Not Available | Positive | 669319 - 670383 | 37813.4 |
| piln domain-containing protein | APT59_RS03125 | Not Available | Positive | 670384 - 670971 | 21804.4 |
| type 4a pilus biogenesis protein pilo | APT59_RS03130 | Not Available | Positive | 670968 - 671621 | 23961.9 |
| pilus assembly protein pilp | APT59_RS03135 | Not Available | Positive | 671618 - 672136 | 18826.7 |
| type iv pilus secretin pilq | APT59_RS03140 | Not Available | Positive | 672136 - 674385 | 80065.5 |
| shikimate kinase arok | APT59_RS03145 | Not Available | Positive | 674391 - 674909 | 19312.5 |
| 3-dehydroquinate synthase | APT59_RS03150 | Not Available | Positive | 674962 - 676056 | 39615.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
