Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pled family two-component system response regulator | APT59_RS02955 | Not Available | Negative | 635963 - 637582 | 60666.7 |
| duf2333 family protein | APT59_RS02960 | Not Available | Positive | 637851 - 638867 | 37981.9 |
| nudix hydrolase | APT59_RS02965 | Not Available | Positive | 638867 - 639418 | 20240.4 |
| translation initiation factor sui1 | APT59_RS02970 | Not Available | Positive | 639563 - 639907 | 12071.5 |
| arginine decarboxylase | APT59_RS02975 | Not Available | Positive | 639994 - 641907 | 71128.4 |
| hypothetical protein | APT59_RS02980 | Not Available | Positive | 641971 - 642225 | 8981.01 |
| lipocalin family protein | APT59_RS02985 | Not Available | Positive | 642222 - 642785 | 20957.3 |
| ybhb/ybcl family raf kinase inhibitor-like protein | APT59_RS02990 | Not Available | Positive | 642802 - 643296 | 17632.8 |
| hypothetical protein | APT59_RS02995 | Not Available | Negative | 643314 - 644117 | 28787.2 |
| prolyl aminopeptidase | APT59_RS03000 | Not Available | Positive | 644251 - 645216 | 36624.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
