Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylamine--glycine ligase | APT59_RS02905 | Not Available | Negative | 624721 - 626004 | 44531.2 |
| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/imp cyclohydrolase | APT59_RS02910 | Not Available | Negative | 626094 - 627686 | 56733.6 |
| dna-binding transcriptional regulator fis | APT59_RS02915 | Not Available | Negative | 627753 - 628070 | 11672.0 |
| trna dihydrouridine synthase dusb | APT59_RS02920 | Not Available | Negative | 628067 - 629059 | 35457.9 |
| duf3426 domain-containing protein | APT59_RS02925 | Not Available | Negative | 629215 - 630618 | 50975.7 |
| 50s ribosomal protein l11 methyltransferase | APT59_RS02930 | Not Available | Negative | 630729 - 631604 | 31891.8 |
| acetyl-coa carboxylase biotin carboxylase subunit | APT59_RS02935 | Not Available | Negative | 631699 - 633045 | 48787.8 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | APT59_RS02940 | Not Available | Negative | 633062 - 633526 | 16233.5 |
| type ii 3-dehydroquinate dehydratase | APT59_RS02945 | Not Available | Negative | 633580 - 634026 | 15899.0 |
| protein-disulfide reductase dsbd | APT59_RS02950 | Not Available | Negative | 634143 - 635906 | 62154.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
