Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uracil-xanthine permease family protein | APT59_RS02855 | Not Available | Negative | 613122 - 614339 | 41689.7 |
| uracil phosphoribosyltransferase | APT59_RS02860 | Not Available | Negative | 614390 - 615028 | 22956.2 |
| hypoxanthine-guanine phosphoribosyltransferase | APT59_RS02865 | Not Available | Positive | 615293 - 615847 | 20683.9 |
| wbuc family cupin fold metalloprotein | APT59_RS02870 | Not Available | Positive | 615844 - 616314 | 17472.9 |
| pa4642 family protein | APT59_RS02875 | Not Available | Positive | 616432 - 616719 | 10891.8 |
| dead/deah box helicase | APT59_RS02880 | Not Available | Negative | 616801 - 618681 | 68389.0 |
| methylenetetrahydrofolate reductase | APT59_RS02885 | Not Available | Negative | 618866 - 619750 | 32447.4 |
| adenosylhomocysteinase | APT59_RS02890 | Not Available | Negative | 619750 - 621156 | 51139.4 |
| acyl-coa thioesterase | APT59_RS02895 | Not Available | Positive | 621474 - 621869 | 14826.8 |
| hybrid sensor histidine kinase/response regulator | APT59_RS02900 | Not Available | Negative | 621853 - 624627 | 102640.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
