Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide chain release factor n(5)-glutamine methyltransferase | APT59_RS02805 | Not Available | Positive | 603459 - 604289 | 30514.3 |
| molybdopterin-synthase adenylyltransferase moeb | APT59_RS02810 | Not Available | Positive | 604283 - 605038 | 26469.2 |
| glutamate racemase | APT59_RS02815 | Not Available | Positive | 605031 - 605822 | 27995.3 |
| acyloxyacyl hydrolase | APT59_RS02820 | Not Available | Positive | 605974 - 606498 | 18761.8 |
| deoxyribodipyrimidine photo-lyase | APT59_RS02825 | Not Available | Negative | 606527 - 607948 | 53536.6 |
| merr family transcriptional regulator | APT59_RS02830 | Not Available | Negative | 607945 - 608889 | 35328.4 |
| duf523 and duf1722 domain-containing protein | APT59_RS02835 | Not Available | Negative | 608879 - 609850 | 36163.5 |
| nad(p)/fad-dependent oxidoreductase | APT59_RS02840 | Not Available | Negative | 609976 - 610962 | 35601.3 |
| tigr01777 family oxidoreductase | APT59_RS02845 | Not Available | Positive | 611139 - 612047 | 33182.2 |
| ferrochelatase | APT59_RS02850 | Not Available | Positive | 612044 - 613099 | 39690.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
