Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | APT59_RS02705 | Not Available | Positive | 583883 - 584791 | 32835.0 |
| hypothetical protein | APT59_RS02710 | Not Available | Positive | 584897 - 585265 | 12861.3 |
| lysr substrate-binding domain-containing protein | APT59_RS02715 | Not Available | Negative | 585262 - 586137 | 31926.9 |
| mfs transporter | APT59_RS02720 | Not Available | Positive | 586241 - 587428 | 41432.5 |
| l-idonate 5-dehydrogenase | APT59_RS02725 | Not Available | Negative | 587550 - 588608 | 37305.2 |
| mfs transporter | APT59_RS02730 | Not Available | Negative | 588611 - 589945 | 48293.4 |
| sdr family oxidoreductase | APT59_RS02735 | Not Available | Negative | 590041 - 590808 | 26935.1 |
| fadr/gntr family transcriptional regulator | APT59_RS02740 | Not Available | Positive | 591054 - 591749 | 26217.4 |
| enolase c-terminal domain-like protein | APT59_RS02745 | Not Available | Positive | 591758 - 593011 | 45976.1 |
| lysr family transcriptional regulator | APT59_RS02750 | Not Available | Negative | 593021 - 593905 | 32448.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
