Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mks condensin complex protein mksf | APT59_RS02550 | Not Available | Negative | 551097 - 553898 | 105058.0 |
| mks condensin complex protein mkse | APT59_RS02555 | Not Available | Negative | 553895 - 554569 | 25394.0 |
| mks condensin complex protein mksb | APT59_RS02560 | Not Available | Negative | 554559 - 555821 | 48162.0 |
| hypothetical protein | APT59_RS02565 | Not Available | Positive | 555983 - 556810 | 29558.8 |
| ribosomal protein s18-alanine n-acetyltransferase | APT59_RS02570 | Not Available | Positive | 556810 - 557262 | 17056.4 |
| hypothetical protein | APT59_RS02575 | Not Available | Negative | 557276 - 557809 | 19636.6 |
| trehalose-phosphatase | APT59_RS02580 | Not Available | Positive | 557936 - 558694 | 27252.4 |
| alpha,alpha-trehalose-phosphate synthase (udp-forming) | APT59_RS02585 | Not Available | Positive | 558696 - 560144 | 55246.0 |
| Trna-met | Not Available | Not Available | Positive | 560407 - 560483 | Not Available |
| duf445 domain-containing protein | APT59_RS02595 | Not Available | Positive | 560933 - 562201 | 47042.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
