Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urease accessory protein ureg | APT59_RS02450 | Not Available | Negative | 532908 - 533522 | 21968.5 |
| urease accessory protein uref | APT59_RS02455 | Not Available | Negative | 533534 - 534205 | 24413.2 |
| urease accessory protein uree | APT59_RS02460 | Not Available | Negative | 534202 - 534702 | 18508.0 |
| tetr family transcriptional regulator | APT59_RS02465 | Not Available | Negative | 534800 - 535492 | 25497.2 |
| pca operon transcription factor pcaq | APT59_RS02470 | Not Available | Positive | 535609 - 536532 | 33529.9 |
| protocatechuate 3,4-dioxygenase subunit beta | APT59_RS02475 | Not Available | Positive | 536633 - 537358 | 27218.4 |
| protocatechuate 3,4-dioxygenase subunit alpha | APT59_RS02480 | Not Available | Positive | 537370 - 537981 | 22718.7 |
| 2-polyprenyl-3-methyl-6-methoxy-1,4- benzoquinone monooxygenase | APT59_RS02485 | Not Available | Negative | 538040 - 538687 | 23910.7 |
| histidine triad nucleotide-binding protein | APT59_RS02490 | Not Available | Negative | 538728 - 539069 | 12589.3 |
| sdr family oxidoreductase | APT59_RS02495 | Not Available | Negative | 539151 - 539939 | 28427.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
