Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent zinc metalloprotease ftsh | APT59_RS02305 | Not Available | Positive | 500734 - 502653 | 69735.9 |
| dihydropteroate synthase | APT59_RS02310 | Not Available | Positive | 502661 - 503524 | 30106.7 |
| phosphoglucosamine mutase | APT59_RS02315 | Not Available | Positive | 503524 - 504861 | 47528.5 |
| triose-phosphate isomerase | APT59_RS02320 | Not Available | Positive | 504928 - 505686 | 25876.2 |
| preprotein translocase subunit secg | APT59_RS22045 | Not Available | Positive | 505686 - 506066 | 12960.7 |
| Trna-leu | Not Available | Not Available | Positive | 506083 - 506168 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 506254 - 506330 | Not Available |
| ribosome maturation factor rimp | APT59_RS02335 | Not Available | Positive | 506458 - 506916 | 17194.6 |
| transcription termination factor nusa | APT59_RS02340 | Not Available | Positive | 506966 - 508438 | 54588.9 |
| translation initiation factor if-2 | APT59_RS02345 | Not Available | Positive | 508465 - 511023 | 92097.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
