Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas oryzihabitans |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | damp environments; farm environments; Fresh water; humid environments; mechanical ventilators; respiratory devices; respiratory equipment; rice paddles; sink drains; soil; soils |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Oryza sativa, Capsicum annuum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human; Plant |
Genome Summary
Pseudomonas oryzihabitans strain USDA-ARS-USMARC-56511 chromosome,
Gene Summary
Adenine Count
845443 bp
Thymine Count
841107 bp
Guanine Count
1571403 bp
Cytosine Count
1576403 bp
Genome Length
4834356 bp
Protein-coding Genes
4304 genes
Non-Coding Genes
171 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage tail assembly chaperone family protein, tac | APT59_RS09970 | Not Available | Positive | 2156820 - 2157194 | 13533.2 |
| Hypothetical protein | APT59_RS09975 | Not Available | Positive | 2157209 - 2157502 | 11223.4 |
| Bacteriophage tail tape measure protein | APT59_RS09985 | Not Available | Positive | 2158096 - 2160831 | 97440.7 |
| Tail protein | APT59_RS09990 | Not Available | Positive | 2160844 - 2161428 | 21170.2 |
| Hypothetical protein | APT59_RS09995 | Not Available | Positive | 2161428 - 2162027 | 21619.2 |
| Hypothetical protein | APT59_RS10000 | Not Available | Positive | 2162032 - 2162430 | 14623.2 |
| Tail fiber protein | APT59_RS10005 | Not Available | Positive | 2162430 - 2165363 | 103624.0 |
| hypothetical protein | APT59_RS10010 | Not Available | Positive | 2165363 - 2165650 | 10665.8 |
| Hypothetical protein | APT59_RS10015 | Not Available | Positive | 2165647 - 2166354 | 26198.5 |
| hypothetical protein | APT59_RS10020 | Not Available | Positive | 2166357 - 2166905 | 19171.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Septicaemia | Causes | PMC10277831 |
| Prosthetic valve endocarditis | Causes | PMC10277831 |
| Peritonitis | Causes | PMC10277831 |
| Periorbital cellulitis | Causes | PMC10865052 |
| Sepsis | Causes | PMC5423562 |
| Bacteremia | Causes | PMC5423562 |
| Peritonitis | Causes | PMC5423562 |
| Endophthalmitis | Causes | PMC5423562 |
| Biliary tract infections | Causes | PMC5423562 |
| Meningitis | Causes | PMC5423562 |
